Pairwise fitting pdb-3izd on emdb-2248 by gmfit



Pairwise fitting of target pdb-3izd on reference emdb-2248 by gmfit(PID:1551653).

RANK[1] Corr.Coeff:0.350 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(emdb-2248)
display:
color:
negative stain single-particle reconstruction of conformation I of the Ltn1 E3 ubiquitin Ligase [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.350 0.309 0.181 0.173 0.166 0.162 0.134 0.112 0.073 0.061

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2248.map.gz", and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.858474,-0.044251,0.510945 81.605040 center 0,0,0 model #1
    move 133.075485,89.030183,230.091587 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!