Pairwise fitting pdb-3izd on emdb-1219 by gmfit



Pairwise fitting of target pdb-3izd on reference emdb-1219 by gmfit(PID:1065959).

RANK[1] Corr.Coeff:0.428 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(emdb-1219)
display:
color:
Crystal structure of a soluble CD28-Fab complex. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.428 0.356 0.353 0.348 0.218 0.195 0.130 0.127 0.106 0.104

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1219.map.gz", and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.294151,-0.796618,-0.528086 93.757285 center 0,0,0 model #1
    move 17.215635,57.222250,-106.896753 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!