Pairwise fitting pdb-3izd on emdb-1190 by gmfit



Pairwise fitting of target pdb-3izd on reference emdb-1190 by gmfit(PID:1358933).

RANK[1] Corr.Coeff:0.412 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(emdb-1190)
display:
color:
Molecular structure of human geminin. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.412 0.341 0.266 0.253 0.226 0.156 0.152 0.140 0.116 0.106

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1190.map.gz", and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.174222,0.546439,0.819177 111.773293 center 0,0,0 model #1
    move 163.630890,13.365622,159.102410 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!