Pairwise fitting pdb-3izd on emdb-1103 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-1103 by gmfit(PID:2106954).





RANK[1] Corr.Coeff:0.437

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-1103)

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Global conformational rearrangements during the activation of the GDP/GTP exchange factor Vav3. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.437
0.412
0.361
0.341
0.303
0.296
0.213
0.167
0.129
0.124







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1103.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.714864,-0.189998,-0.672956 159.286464 center 0,0,0 model #1
move -44.683544,31.641313,-84.578231 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!