Pairwise fitting pdb-3gzu on pdb-1ld4 by gmfit



Pairwise fitting of target pdb-3gzu on reference pdb-1ld4 by gmfit(PID:1135783).

RANK[1] Corr.Coeff:0.351 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(pdb-1ld4)
display:
color:
b'PLACEMENT OF THE STRUCTURAL PROTEINS IN SINDBIS VIRUS ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.351 0.341 0.308 0.292 0.287 0.278 0.271 0.263 0.261 0.228

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1ld4"(PDB-format) or "1ld4"(mmCIF-format), and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.618881,-0.593379,0.514672 103.584608 center 0,0,0 model #1
    move 270.890944,165.001791,92.690949 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!