Pairwise fitting pdb-3gzu on emdb-5499 by gmfit



Pairwise fitting of target pdb-3gzu on reference emdb-5499 by gmfit(PID:1076868).

RANK[1] Corr.Coeff:0.556 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(emdb-5499)
display:
color:
CryoEM structure of Dengue virus, partial map [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.556 0.533 0.525 0.517 0.516 0.499 0.499 0.493 0.481 0.479

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5499.map.gz", and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.555832,0.452398,0.697414 114.454658 center 0,0,0 model #1
    move -231.529341,-149.585483,-358.761631 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!