Pairwise fitting pdb-3gzu on emdb-5025 by gmfit



Pairwise fitting of target pdb-3gzu on reference emdb-5025 by gmfit(PID:1180668).

RANK[1] Corr.Coeff:0.402 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(emdb-5025)
display:
color:
Cryo-EM structure of Pyrococcus furiosus pre-initiation complex [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.402 0.352 0.352 0.346 0.344 0.339 0.336 0.320 0.313 0.306

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5025.map.gz", and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.792994,-0.259826,-0.551045 159.357940 center 0,0,0 model #1
    move -54.748489,299.062224,197.640109 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!