Pairwise fitting pdb-3gzu on emdb-2175 by gmfit










Pairwise fitting of target pdb-3gzu on reference emdb-2175 by gmfit(PID:1827).





RANK[1] Corr.Coeff:0.461

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3gzu)

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b'VP7 RECOATED ROTAVIRUS DLP                                            ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3gzu)]







REFERENCE(emdb-2175)

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Negative stain electron microscopy of a CSN(dCsn5)-SCF~Nedd8/Skp2/Cks1 complex [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.461
0.385
0.356
0.344
0.332
0.318
0.308
0.306
0.296
0.279







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2175.map.gz", and read it.

  2.  Download the Target molecule "3gzu"(PDB-format) or
  "3gzu"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.891461,-0.330716,-0.309717 94.523702 center 0,0,0 model #1
move 233.903776,378.262751,-16.170523 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!