Pairwise fitting pdb-3dg5 on pdb-5afi by gmfit










Pairwise fitting of target pdb-3dg5 on reference pdb-5afi by gmfit(PID:1349551).





RANK[1] Corr.Coeff:0.870

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(pdb-5afi)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.870
0.775
0.768
0.728
0.724
0.720
0.711
0.704
0.702
0.696







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5afi"(PDB-format) or 
 "5afi"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.785367,-0.168487,0.595660 127.629427 center 0,0,0 model #1
move 161.354337,152.629018,163.570201 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!