Pairwise fitting pdb-3dg5 on pdb-4v5m by gmfit



Pairwise fitting of target pdb-3dg5 on reference pdb-4v5m by gmfit(PID:1151362).

RANK[1] Corr.Coeff:0.858 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(pdb-4v5m)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.858 0.828 0.763 0.738 0.724 0.724 0.707 0.706 0.700 0.698

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v5m"(PDB-format) or "4v5m"(mmCIF-format), and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.013800,0.636419,-0.771220 9.899276 center 0,0,0 model #1
    move -6.787491,-0.389282,-3.763384 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!