Pairwise fitting pdb-3dg5 on pdb-2rdo by gmfit










Pairwise fitting of target pdb-3dg5 on reference pdb-2rdo by gmfit(PID:2204169).





RANK[1] Corr.Coeff:0.770

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(pdb-2rdo)

display:



color:


b'50S SUBUNIT WITH EF-G(GDPNP) AND RRF BOUND                            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.770
0.732
0.722
0.715
0.699
0.696
0.695
0.694
0.688
0.686







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2rdo"(PDB-format) or 
 "2rdo"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.836211,0.354033,-0.418822 174.592721 center 0,0,0 model #1
move 24.822889,-10.351717,-12.157344 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!