Pairwise fitting pdb-3dg5 on pdb-1ml5 by gmfit



Pairwise fitting of target pdb-3dg5 on reference pdb-1ml5 by gmfit(PID:1645544).

RANK[1] Corr.Coeff:0.597 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(pdb-1ml5)
display:
color:
b'STRUCTURE OF THE E. COLI RIBOSOMAL TERMINATION COMPLEX WITH RELEASE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.597 0.584 0.576 0.563 0.562 0.560 0.553 0.535 0.533 0.526

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1ml5"(PDB-format) or "1ml5"(mmCIF-format), and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.214909,-0.156860,0.963955 160.046435 center 0,0,0 model #1
    move 11.759003,-2.821172,8.394069 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!