Pairwise fitting pdb-3dg5 on emdb-8237 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-8237 by gmfit(PID:3528173).





RANK[1] Corr.Coeff:0.912

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-8237)

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Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.912
0.851
0.832
0.745
0.731
0.714
0.689
0.687
0.678
0.642







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8237.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.690610,0.722315,-0.036331 178.172735 center 0,0,0 model #1
move 193.360255,182.810373,193.526413 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!