Pairwise fitting pdb-3dg5 on emdb-8113 by gmfit



Pairwise fitting of target pdb-3dg5 on reference emdb-8113 by gmfit(PID:1360665).

RANK[1] Corr.Coeff:0.901 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(emdb-8113)
display:
color:
Structure of RelA bound to the 70S ribosome (focused classification, TGS domain) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.901 0.773 0.765 0.737 0.708 0.706 0.700 0.699 0.691 0.681

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_8113.map.gz", and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.806064,-0.134779,0.576277 126.382499 center 0,0,0 model #1
    move 270.102650,265.488268,267.715902 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!