Pairwise fitting pdb-3dg5 on emdb-5842 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-5842 by gmfit(PID:2481614).





RANK[1] Corr.Coeff:0.902

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-5842)

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EttA-bound E. coli 70S ribosome complex containing P-site tRNA (raw map) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.902
0.890
0.724
0.717
0.701
0.664
0.661
0.654
0.647
0.639







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5842.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.695386,-0.718594,0.007802 176.105244 center 0,0,0 model #1
move 179.053598,180.113215,189.740123 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!