Pairwise fitting pdb-3dg5 on emdb-5800 by gmfit



Pairwise fitting of target pdb-3dg5 on reference emdb-5800 by gmfit(PID:3875650).

RANK[1] Corr.Coeff:0.904 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(emdb-5800)
display:
color:
Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.904 0.766 0.748 0.715 0.701 0.693 0.690 0.690 0.675 0.663

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5800.map.gz", and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.026312,0.015485,-0.999534 88.395337 center 0,0,0 model #1
    move 151.260743,161.013040,151.964283 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!