Pairwise fitting pdb-3dg5 on emdb-5797 by gmfit



Pairwise fitting of target pdb-3dg5 on reference emdb-5797 by gmfit(PID:1096208).

RANK[1] Corr.Coeff:0.911 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(emdb-5797)
display:
color:
Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.911 0.854 0.763 0.749 0.725 0.712 0.694 0.690 0.669 0.668

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5797.map.gz", and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.020259,-0.004664,-0.999784 90.680690 center 0,0,0 model #1
    move 153.371561,162.285975,154.357779 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!