Pairwise fitting pdb-3dg5 on emdb-5796 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-5796 by gmfit(PID:3174426).





RANK[1] Corr.Coeff:0.902

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-5796)

display:



color:


Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.902
0.752
0.748
0.722
0.711
0.698
0.697
0.679
0.679
0.659







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5796.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.024569,-0.024013,-0.999410 89.382827 center 0,0,0 model #1
move 153.034830,160.463388,154.643763 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!