Pairwise fitting pdb-3dg5 on emdb-5364 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-5364 by gmfit(PID:3608103).





RANK[1] Corr.Coeff:0.893

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-5364)

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New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 4B (partially rotated (II) 70S ribosome with A-site and P-site tRNAs) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.893
0.879
0.830
0.746
0.730
0.724
0.684
0.678
0.671
0.652







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5364.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.886432,-0.316295,-0.337929 2.949250 center 0,0,0 model #1
move -4.321828,-0.299975,-2.570081 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!