Pairwise fitting pdb-3dg5 on emdb-5266 by gmfit



Pairwise fitting of target pdb-3dg5 on reference emdb-5266 by gmfit(PID:2498422).

RANK[1] Corr.Coeff:0.874 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(emdb-5266)
display:
color:
Intermediate states observed in the pre-translocation ribosome during tRNA translocation [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.874 0.842 0.731 0.711 0.693 0.665 0.653 0.650 0.642 0.628

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5266.map.gz", and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.864517,-0.277988,-0.418729 4.103831 center 0,0,0 model #1
    move -3.851992,-1.549934,-4.033543 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!