Pairwise fitting pdb-3dg5 on emdb-4125 by gmfit



Pairwise fitting of target pdb-3dg5 on reference emdb-4125 by gmfit(PID:1543209).

RANK[1] Corr.Coeff:0.916 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(emdb-4125)
display:
color:
Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.916 0.784 0.784 0.749 0.717 0.714 0.705 0.698 0.698 0.683

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_4125.map.gz", and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.784790,-0.175041,0.594530 126.927573 center 0,0,0 model #1
    move 162.279059,154.393378,159.478778 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!