Pairwise fitting pdb-3dg5 on emdb-2490 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-2490 by gmfit(PID:3621838).





RANK[1] Corr.Coeff:0.687

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-2490)

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Structure of the 39S Large Subunit of the Mammalian Mitochondrial Ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.687
0.655
0.646
0.641
0.640
0.637
0.637
0.636
0.623
0.621







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2490.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.152222,-0.946578,0.284285 105.381749 center 0,0,0 model #1
move 196.437077,177.602079,179.928844 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!