Pairwise fitting pdb-3dg5 on emdb-1829 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-1829 by gmfit(PID:3850731).





RANK[1] Corr.Coeff:0.796

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-1829)

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color:


SecM-stalled ribosomes adopt an altered geometry at the peptidyltransferase center [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.796
0.741
0.740
0.707
0.696
0.692
0.674
0.667
0.652
0.649







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1829.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.029304,0.102634,0.994287 169.352342 center 0,0,0 model #1
move 6.905176,3.489449,-6.073969 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!