Pairwise fitting pdb-3dg5 on emdb-1261 by gmfit



Pairwise fitting of target pdb-3dg5 on reference emdb-1261 by gmfit(PID:1306768).

RANK[1] Corr.Coeff:0.734 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(emdb-1261)
display:
color:
Following the signal sequence from ribosomal tunnel exit to signal recognition particle. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.734 0.678 0.665 0.654 0.640 0.640 0.638 0.630 0.628 0.611

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1261.map.gz", and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.045544,0.109031,0.992994 175.617771 center 0,0,0 model #1
    move 5.982572,4.043314,-5.198158 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!