Pairwise fitting pdb-3dg4 on pdb-5u4i by gmfit



Pairwise fitting of target pdb-3dg4 on reference pdb-5u4i by gmfit(PID:1683244).

RANK[1] Corr.Coeff:0.884 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(pdb-5u4i)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.884 0.881 0.788 0.763 0.742 0.742 0.726 0.720 0.718 0.718

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5u4i"(PDB-format) or "5u4i"(mmCIF-format), and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.010568,0.083117,-0.996484 62.571780 center 0,0,0 model #1
    move 225.531919,227.833171,226.542548 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!