Pairwise fitting pdb-3dg4 on pdb-4v5m by gmfit










Pairwise fitting of target pdb-3dg4 on reference pdb-4v5m by gmfit(PID:4080700).





RANK[1] Corr.Coeff:0.857

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(pdb-4v5m)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.857
0.825
0.771
0.730
0.723
0.714
0.709
0.707
0.697
0.696







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v5m"(PDB-format) or 
 "4v5m"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.261561,0.767411,-0.585377 9.144202 center 0,0,0 model #1
move -7.420563,-0.657747,-2.573777 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!