Pairwise fitting pdb-3dg4 on pdb-3dg5 by gmfit










Pairwise fitting of target pdb-3dg4 on reference pdb-3dg5 by gmfit(PID:3718473).





RANK[1] Corr.Coeff:0.969

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(pdb-3dg5)

display:



color:


b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.969
0.895
0.731
0.731
0.700
0.699
0.686
0.682
0.680
0.652







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3dg5"(PDB-format) or 
 "3dg5"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.890121,0.279551,0.359911 1.282480 center 0,0,0 model #1
move -0.769732,-0.042110,0.684361 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!