Pairwise fitting pdb-3dg4 on pdb-3dg2 by gmfit










Pairwise fitting of target pdb-3dg4 on reference pdb-3dg2 by gmfit(PID:3869168).





RANK[1] Corr.Coeff:0.981

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(pdb-3dg2)

display:



color:


b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF A     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.981
0.935
0.729
0.725
0.711
0.709
0.682
0.680
0.668
0.651







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3dg2"(PDB-format) or 
 "3dg2"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.932918,0.159389,0.322893 0.744850 center 0,0,0 model #1
move -2.619893,0.842784,-1.729144 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!