Pairwise fitting pdb-3dg4 on emdb-8112 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-8112 by gmfit(PID:3625667).





RANK[1] Corr.Coeff:0.904

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-8112)

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Structure of RelA bound to the 70S ribosome (catalytic domain conformation 4) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.904
0.743
0.715
0.692
0.690
0.687
0.686
0.683
0.681
0.671







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8112.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.802851,-0.126028,0.582706 127.031536 center 0,0,0 model #1
move 269.456210,263.549304,270.410308 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!