Pairwise fitting pdb-3dg4 on emdb-6584 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-6584 by gmfit(PID:3981165).





RANK[1] Corr.Coeff:0.897

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-6584)

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The structure of elongation factor 4 (EF4/LepA) in GTP form bound to the ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.897
0.755
0.740
0.739
0.715
0.690
0.686
0.684
0.675
0.668







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6584.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.699705,-0.714265,0.015441 177.754329 center 0,0,0 model #1
move 205.553028,205.997923,210.685192 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!