Pairwise fitting pdb-3dg4 on emdb-6550 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-6550 by gmfit(PID:5461).





RANK[1] Corr.Coeff:0.912

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-6550)

display:



color:


Cryo-EM map of EF4-bound ribosomal complexe [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.912
0.756
0.740
0.726
0.702
0.692
0.690
0.689
0.682
0.667







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6550.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.766284,-0.356898,0.534259 63.429542 center 0,0,0 model #1
move 211.330219,207.306555,211.200070 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!