Pairwise fitting pdb-3dg4 on emdb-5785 by gmfit



Pairwise fitting of target pdb-3dg4 on reference emdb-5785 by gmfit(PID:1200057).

RANK[1] Corr.Coeff:0.909 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(emdb-5785)
display:
color:
EttA-bound E. coli 70S ribosome complex containing P-site tRNA [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.909 0.905 0.721 0.703 0.695 0.694 0.687 0.647 0.637 0.637

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5785.map.gz", and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.418280,0.905444,-0.072195 3.931696 center 0,0,0 model #1
    move 0.810877,-0.193984,-6.889637 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!