Pairwise fitting pdb-3dg4 on emdb-5307 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-5307 by gmfit(PID:3874074).





RANK[1] Corr.Coeff:0.879

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-5307)

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Three-dimensional cryo-electron microscopy density map of the 70S ribosome from Mycobacterium smegmatis [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.879
0.866
0.734
0.715
0.707
0.701
0.691
0.690
0.678
0.675







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5307.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.693883,-0.720036,0.008654 178.650170 center 0,0,0 model #1
move 2.704457,-12.425225,4.604774 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!