Pairwise fitting pdb-3dg4 on emdb-5030 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-5030 by gmfit(PID:4150787).





RANK[1] Corr.Coeff:0.885

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-5030)

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GTPase activation of elongation factor EF-Tu by the ribosome during decoding: a cryo-EM structure of the  Thermus thermophilus ribosome in which the ternary complex of EF-Tu, tRNA and guanine nucleotide has been trapped on the ribosome with the antibiotic kirromycin. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.885
0.860
0.732
0.699
0.676
0.670
0.665
0.653
0.645
0.634







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5030.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.955597,0.292058,-0.039189 3.155831 center 0,0,0 model #1
move -7.607541,-3.892162,-2.830437 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!