Pairwise fitting pdb-3dg4 on emdb-4125 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-4125 by gmfit(PID:1461037).





RANK[1] Corr.Coeff:0.921

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-4125)

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Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.921
0.784
0.766
0.747
0.726
0.724
0.714
0.703
0.698
0.696







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_4125.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.789340,-0.172067,0.589352 128.682738 center 0,0,0 model #1
move 161.448301,154.322586,160.199954 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!