Pairwise fitting pdb-3dg4 on emdb-4123 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-4123 by gmfit(PID:4141964).





RANK[1] Corr.Coeff:0.910

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-4123)

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Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.910
0.770
0.747
0.737
0.723
0.714
0.714
0.707
0.704
0.699







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_4123.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.772340,-0.166129,0.613100 129.243724 center 0,0,0 model #1
move 160.451497,152.867162,162.364327 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!