Pairwise fitting pdb-3dg4 on emdb-1854 by gmfit



Pairwise fitting of target pdb-3dg4 on reference emdb-1854 by gmfit(PID:1323411).

RANK[1] Corr.Coeff:0.899 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(emdb-1854)
display:
color:
An insertion domain within mammalian mitochondrial translation initiation factor 2 serves the role of eubacterial initiation factor 1 [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.899 0.745 0.725 0.716 0.693 0.690 0.688 0.686 0.673 0.665

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1854.map.gz", and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.712707,0.701090,-0.022840 178.103086 center 0,0,0 model #1
    move 0.003967,-3.479800,5.377397 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!