Pairwise fitting pdb-3dg4 on emdb-1796 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-1796 by gmfit(PID:3769676).





RANK[1] Corr.Coeff:0.805

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-1796)

display:



color:


Proteomic characterization of archaeal ribosomes reveals the presence of novel archaeal-specific ribosomal proteins [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.805
0.755
0.745
0.736
0.736
0.726
0.708
0.705
0.701
0.698







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1796.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.806348,-0.550353,0.216598 111.825529 center 0,0,0 model #1
move -2.789336,-14.369915,7.813014 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!