Pairwise fitting pdb-3dg4 on emdb-1615 by gmfit



Pairwise fitting of target pdb-3dg4 on reference emdb-1615 by gmfit(PID:1593776).

RANK[1] Corr.Coeff:0.891 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(emdb-1615)
display:
color:
Three-dimensional structure of YidC bound to the translating ribosome [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.891 0.866 0.864 0.738 0.735 0.717 0.713 0.676 0.672 0.671

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1615.map.gz", and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.715610,-0.605177,-0.348802 2.394973 center 0,0,0 model #1
    move 197.058838,203.865305,190.424766 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!