Pairwise fitting pdb-2zz9 on pdb-2at9 by gmfit



Pairwise fitting of target pdb-2zz9 on reference pdb-2at9 by gmfit(PID:1146514).

RANK[1] Corr.Coeff:0.702 [JSmol] [Molmil]
TARGET(pdb-2zz9)
display:
color:
b'STRUCTURE OF AQUAPORIN-4 S180D MUTANT AT 2.8 A RESOLUTION BY ELECTRON ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-2zz9)]
REFERENCE(pdb-2at9)
display:
color:
b'STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM BY ELECTRON ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.702 0.699 0.689 0.664 0.642 0.638 0.632 0.620 0.612 0.611

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2at9"(PDB-format) or "2at9"(mmCIF-format), and read it.
  2. Download the Target molecule "2zz9"(PDB-format) or "2zz9"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.144027,0.170762,0.974729 177.613267 center 0,0,0 model #1
    move 77.979745,-2.803924,-132.475486 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!