Pairwise fitting pdb-1x18 on pdb-5u1d by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-5u1d by gmfit(PID:4052322).





RANK[1] Corr.Coeff:0.616

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-5u1d)

display:



color:


b'CRYO-EM STRUCTURE OF THE HUMAN TAP ATP-BINDING CASSETTE TRANSPORTER   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.616
0.540
0.508
0.507
0.502
0.497
0.484
0.439
0.395
0.354







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5u1d"(PDB-format) or 
 "5u1d"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.268085,0.910909,0.313648 129.338632 center 0,0,0 model #1
move -41.817929,79.598853,34.646609 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!