Pairwise fitting pdb-1x18 on pdb-5kg8 by gmfit



Pairwise fitting of target pdb-1x18 on reference pdb-5kg8 by gmfit(PID:1089723).

RANK[1] Corr.Coeff:0.490 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(pdb-5kg8)
display:
color:
b'RIGOR MYOSIN X CO-COMPLEXED WITH AN ACTIN FILAMENT ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.490 0.484 0.448 0.428 0.425 0.389 0.375 0.353 0.338 0.329

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5kg8"(PDB-format) or "5kg8"(mmCIF-format), and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.224936,-0.842794,-0.488981 69.184398 center 0,0,0 model #1
    move 46.071179,-101.511654,-2.588298 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!