Pairwise fitting pdb-1x18 on pdb-5fkw by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-5fkw by gmfit(PID:4082039).





RANK[1] Corr.Coeff:0.551

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-5fkw)

display:



color:


b'CRYO-EM STRUCTURE OF THE E. COLI REPLICATIVE DNA POLYMERASE COMPLEX   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.551
0.490
0.441
0.421
0.418
0.415
0.414
0.400
0.399
0.371







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5fkw"(PDB-format) or 
 "5fkw"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.860056,0.296913,0.414906 129.062371 center 0,0,0 model #1
move 102.579984,189.241838,150.091549 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!