Pairwise fitting pdb-1x18 on pdb-4pt2 by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-4pt2 by gmfit(PID:3749870).





RANK[1] Corr.Coeff:0.546

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-4pt2)

display:



color:


b'MYXOCOCCUS XANTHUS ENCAPSULIN PROTEIN (ENCA)                          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.546
0.533
0.519
0.500
0.490
0.480
0.472
0.471
0.424
0.409







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4pt2"(PDB-format) or 
 "4pt2"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.660377,0.000294,0.750934 122.091507 center 0,0,0 model #1
move 103.590325,-7.999045,11.310867 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!