Pairwise fitting pdb-1x18 on pdb-3j5s by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-3j5s by gmfit(PID:1241023).





RANK[1] Corr.Coeff:0.545

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-3j5s)

display:



color:


b'ETTA BINDS TO RIBOSOME EXIT SITE AND REGULATES TRANSLATION BY         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.545
0.479
0.466
0.457
0.452
0.447
0.446
0.445
0.412
0.402







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j5s"(PDB-format) or 
 "3j5s"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.912852,0.405555,0.047175 129.195246 center 0,0,0 model #1
move -22.068341,39.174700,34.245014 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!