Pairwise fitting pdb-1x18 on pdb-3j2q by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-3j2q by gmfit(PID:2212233).





RANK[1] Corr.Coeff:0.623

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-3j2q)

display:



color:


b'MODEL OF MEMBRANE-BOUND FACTOR VIII ORGANIZED IN 2D CRYSTALS          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.623
0.558
0.546
0.542
0.526
0.517
0.509
0.483
0.476
0.463







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j2q"(PDB-format) or 
 "3j2q"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.141163,0.959682,-0.243070 112.659696 center 0,0,0 model #1
move -83.848273,6.447597,250.818803 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!