Pairwise fitting pdb-1x18 on pdb-1ysh by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-1ysh by gmfit(PID:4075175).





RANK[1] Corr.Coeff:0.500

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-1ysh)

display:



color:


b'LOCALIZATION AND DYNAMIC BEHAVIOR OF RIBOSOMAL PROTEIN L30E           ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
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Corr.Coeff.
0.500
0.438
0.428
0.407
0.405
0.392
0.390
0.371
0.360
0.328







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1ysh"(PDB-format) or 
 "1ysh"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.411981,-0.840832,-0.351102 157.819405 center 0,0,0 model #1
move -59.218990,13.094993,128.448503 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!