Pairwise fitting pdb-1x18 on pdb-1t1m by gmfit



Pairwise fitting of target pdb-1x18 on reference pdb-1t1m by gmfit(PID:1549245).

RANK[1] Corr.Coeff:0.422 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(pdb-1t1m)
display:
color:
b'BINDING POSITION OF RIBOSOME RECYCLING FACTOR (RRF) ON THE E. COLI 70S' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.422 0.375 0.373 0.348 0.345 0.344 0.326 0.320 0.317 0.304

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1t1m"(PDB-format) or "1t1m"(mmCIF-format), and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.927452,0.360773,0.098365 67.873763 center 0,0,0 model #1
    move 5.227214,70.923592,-86.495031 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!