Pairwise fitting pdb-1x18 on pdb-1d3i by gmfit



Pairwise fitting of target pdb-1x18 on reference pdb-1d3i by gmfit(PID:1412791).

RANK[1] Corr.Coeff:0.600 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(pdb-1d3i)
display:
color:
b'CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 14 (HRV14) COMPLEXED WITH A TWO-' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.600 0.529 0.512 0.505 0.501 0.487 0.480 0.473 0.466 0.449

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1d3i"(PDB-format) or "1d3i"(mmCIF-format), and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.576883,0.735921,-0.354438 122.644198 center 0,0,0 model #1
    move -16.128810,-55.248226,151.789568 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!