Pairwise fitting pdb-1x18 on emdb-8315 by gmfit



Pairwise fitting of target pdb-1x18 on reference emdb-8315 by gmfit(PID:3806239).

RANK[1] Corr.Coeff:0.615 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(emdb-8315)
display:
color:
Structure of the STRA6 receptor for retinol uptake in complex with calmodulin [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.615 0.517 0.492 0.491 0.433 0.425 0.410 0.406 0.401 0.390

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_8315.map.gz", and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.247986,-0.451964,-0.856873 133.203686 center 0,0,0 model #1
    move 67.975342,55.063639,128.788873 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!